Haemaphysalis longicornis (Longhorned tick, HaeL-2018) Assembly and Gene Annotation
About Haemaphysalis longicornis
Haemaphysalis longicornis, the Asian longhorned tick, longhorned tick, bush tick, Asian tick, or cattle tick, is a parasitic arachnid belonging to the tick family Ixodidae. The Asian longhorned tick is a known livestock pest and can transmit a disease called theileriosis to cattle but not to humans. However, the tick has been associated with several other tickborne diseases in humans.
Picture credit: Creative Commons Attribution 4.0 via Wikimedia Commons (Image source)
(Text from Wikipedia, the free encyclopedia [1].)
Assembly
The assembly presented is the GCA013339765v1 assembly submitted[2,3] to INSDC with the assembly accession GCA_013339765.1.
Annotation
Ensembl Metazoa displays the original TIGMIC Group[2,3] annotation (GCA013339765v1.0 gene set, Sep. 2021).
Small RNA features and genes, protein features and cross-references have been annotated by Ensembl Metazoa.
References
Haemaphysalis longicornis, (accessed January 11, 2022). Wikipedia contributors, Wikipedia, The Free Encyclopedia.
TIGMIC Group, Beijing Institute of Microbiology and Epidemiology
Large-Scale Comparative Analyses of Tick Genomes Elucidate Their Genetic Diversity and Vector Capacities. Jia N, Wang J, Shi W, et al. . Cell. 2020 Sep;182(5):1328-1340.e13. DOI: 10.1016/j.cell.2020.07.023. PMID: 32814014.
Statistics
Summary
Assembly | ASM1333976v1, INSDC Assembly GCA_013339765.1, |
Database version | 113.1 |
Golden Path Length | 2,554,970,390 |
Genebuild by | TIGMIC Group, Beijing Institute of Microbiology and Epidemiology |
Genebuild method | Import |
Data source | TIGMIC Group, Beijing Institute of Microbiology and Epidemiology |
Gene counts
Coding genes | 27,144 |
Non coding genes | 6,980 |
Small non coding genes | 6,980 |
Gene transcripts | 34,124 |