Hofstenia miamia (Panther worm, MS-H3) Assembly and Gene Annotation
About Hofstenia miamia
The three-banded panther worm, belongs to a lineage (Phylum: Xenacoelomorpha) that represents the likely sister-group to all other animals with bilateral symmetry (bilaterians).
Text from Srivastava Lab web-page. Picture credit: Andrew R. Gehrke, Srivastava Lab.
Assembly
The Hofstenia miamia genome was sequenced and assembled at Harvard University.
Annotation
The gene models were predicted at Harvard University and deposited at Srivastava Lab Hofstenia miamia data page from where Ensembl Genomes imported the data. Non-coding RNA genes were added using the Ensembl Genomes pipeline.
References
- Acoel genome reveals the regulatory landscape of whole-body
regeneration.
Emily Neverett, Yi-Jyun Luo, Alexander Brandt, Lorenzo Ricci, Ryan E. Hulett, Annika Gompers, J. Graham Ruby, Daniel S. Rokhsar, Peter W. Reddien, Mansi Srivastava. 2019. Science. Vol. 363, Issue 6432
Picture credit: Andrew R. Gehrke, http://www.srivastavalab.org
Statistics
Summary
Assembly | HmiaM1, INSDC Assembly GCA_004352715.1, |
Database version | 113.1 |
Golden Path Length | 949,842,658 |
Genebuild by | Srivastava Lab - Harvard University |
Genebuild method | Import |
Data source | Harvard University |
Gene counts
Coding genes | 22,632 |
Non coding genes | 849 |
Small non coding genes | 847 |
Long non coding genes | 2 |
Gene transcripts | 23,481 |