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Ixodes scapularis (Black-legged tick, PalLabHiFi) (ASM1692078v2) ▼

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Ixodes scapularis (Black-legged tick, PalLabHiFi) Assembly and Gene Annotation

The Ixodes scapularis data and its display on Ensembl Genomes are made possible through a joint effort by the Ensembl Genomes group and VectorBase, a component of VEuPathDB.

The assembly name may not match that from INSDC due to additional community contributions applied by VEuPathDB to the initial INSDC assembly (recorded by the assembly accession).

Picture credit (public domain): Scott Bauer (USDA) 1998

About Ixodes scapularis

Ixodes scapularis, the black-legged tick, is a hard-bodied tick from the Ixodidae family. I. scapularis is the primary vector for Lyme disease, transmitting the pathogenic bacterium Borrelia burgdorfei.

Source: VectorBase

Picture credit (public domain): Scott Bauer (USDA) 1998

Assembly

The assembly presented is the GCA016920785v2 assembly submitted[1] to INSDC with the assembly accession GCA_016920785.2.

Annotation

Ensembl Metazoa displays the genes from NCBI Ixodes scapularis Annotation Release 103. Small RNA features, protein features and cross-references have been annotated by Ensembl Metazoa.

References

  1. University of Maryland

Picture credit: Scott Bauer (USDA) 1998

Statistics

Summary

AssemblyASM1692078v2, INSDC Assembly GCA_016920785.2,
Database version115.1
Golden Path Length2,226,883,318
Genebuild byNCBI
Genebuild methodImport
Data sourceUniversity of Maryland

Gene counts

Coding genes26,659
Non coding genes5,760
Small non coding genes3,328
Long non coding genes2,322
Misc non coding genes110
Pseudogenes6,237
Gene transcripts47,545