Melanaphis sacchari (Sugarcane aphid, LSU) Assembly and Gene Annotation
About Melanaphis sacchari
The sugarcane aphid,, is an aphid in the superfamily Aphidoidea in the order Hemiptera. It is a true bug and sucks sap from plants. It is mostly found in Saccharum and Sorghum species. The species primarily reproduces via parthenogenesis, although sexual morphs have been discovered in China, Japan, and Mexico - in China the eggs overwinter in the host Miscanthus sacchariflorus.
Picture credit: Public domain via Wikimedia Commons (Image source)
Taxonomy ID 742174
(Text from Wikipedia.)
More information General information about this species can be found in Wikipedia
Assembly
The assembly presented here has been imported from INSDC and is linked to the assembly accession [GCA_002803265.2].
The total length of the assembly is 300271876 bp contained within 1347 scaffolds. The scaffold N50 value is 3012626, the scaffold L50 value is 25. The GC% content of the assembly is 27.0%.
Annotation
The annotation presented is derived from annotation submitted to INSDC with the assembly accession GCA_002803265.2.
Ensembl Metazoa displaying genes imported from NCBI RefSeq annotation release v100. Small RNA features, protein features, BLAST hits and cross-references have been computed by Ensembl Metazoa.
Statistics
Summary
Assembly | SCAv2.0, INSDC Assembly GCA_002803265.2, |
Database version | 113.1 |
Golden Path Length | 300,271,876 |
Genebuild by | NCBI |
Genebuild method | Import |
Data source | USDA-ARS Center for Grain and Animal Health Research |
Gene counts
Coding genes | 12,320 |
Non coding genes | 661 |
Small non coding genes | 296 |
Long non coding genes | 365 |
Pseudogenes | 638 |
Gene transcripts | 20,674 |