Ostrea edulis (European flat oyster, OE_ROSLIN_2020) Assembly and Gene Annotation
About Ostrea edulis
Ostrea edulis, commonly known as the European flat oyster, is a species of oyster native to Europe. In Britain and Ireland, regional names include Colchester native oyster, mud oyster, or edible oyster. In France, Ostrea edulis are known as huîtres plates except for those that come from the Belon River estuary in Brittany, France, which are known as Belons.
Picture credit: Creative Commons Attribution-Share Alike 3.0 via Wikimedia Commons (Image source) Taxonomy ID 37623
(Text from Wikipedia.)
More information General information about this species can be found in Wikipedia
Assembly
The assembly presented here has been imported from INSDC and is linked to the assembly accession [GCA_023158985.2].
The total length of the assembly is 935154372 bp contained within 1364 scaffolds. The scaffold N50 value is 95564955, the scaffold L50 value is 5. Assembly gaps span 153250 bp. The GC% content of the assembly is 35.5%.
Annotation
The annotation presented is derived from annotation submitted to INSDC with the assembly accession GCA_023158985.2.
Ensembl Metazoa displaying genes imported from NCBI RefSeq annotation release v100. Small RNA features, protein features, BLAST hits and cross-references have been computed by Ensembl Metazoa.
Statistics
Summary
Assembly | OEROSLIN_1.1, INSDC Assembly GCA_023158985.1, |
Database version | 113.1 |
Golden Path Length | 935,154,372 |
Genebuild by | NCBI |
Genebuild method | Import |
Data source | AquaLeap |
Gene counts
Coding genes | 28,480 |
Non coding genes | 7,876 |
Small non coding genes | 952 |
Long non coding genes | 6,924 |
Pseudogenes | 2,208 |
Gene transcripts | 71,451 |