Rhagoletis pomonella (Apple magot fly, Grant_MI) Assembly and Gene Annotation
About Rhagoletis pomonella
The apple maggot (Rhagoletis pomonella), also known as the railroad worm, is a species of fruit fly, and a pest of several types of fruits, especially apples. This species evolved about 150 years ago through a sympatric shift from the native host hawthorn to the domesticated apple species Malus domestica in the northeastern United States. This fly is believed to have been accidentally spread to the western United States from the endemic eastern United States region through contaminated apples at multiple points throughout the 20th century. The apple maggot uses Batesian mimicry as a method of defense, with coloration resembling that of the forelegs and pedipalps of a jumping spider.
Picture credit: Creative Commons Attribution 3.0 via Wikimedia Commons (Image source)
Taxonomy ID 28610
(Text from Wikipedia.)
More information General information about this species can be found in Wikipedia
Assembly
The assembly presented here has been imported from INSDC and is linked to the assembly accession [GCA_013731165.1].
The total length of the assembly is 1223288327 bp contained within 32060 scaffolds. The scaffold N50 value is 72319622, the scaffold L50 value is 7. Assembly gaps span 98042700 bp. The GC% content of the assembly is 36.0%.
Annotation
Ensembl Metazoa displaying genes imported from NCBI RefSeq annotation release v100. Small RNA features, protein features, BLAST hits and cross-references have been computed by Ensembl Metazoa.
Statistics
Summary
Assembly | Rhpom_1.0, INSDC Assembly GCA_013731165.1, |
Database version | 113.1 |
Golden Path Length | 1,223,288,327 |
Genebuild by | NCBI |
Genebuild method | Import |
Data source | Department of Entomology, University of Illinois at Urbana-Champaign |
Gene counts
Coding genes | 21,904 |
Non coding genes | 2,568 |
Small non coding genes | 511 |
Long non coding genes | 2,057 |
Pseudogenes | 712 |
Gene transcripts | 34,989 |