Rhagoletis pomonella (Apple magot fly, Grant_MI) (Rhpom_1.0)

Rhagoletis pomonella (Apple magot fly, Grant_MI) Assembly and Gene Annotation

About Rhagoletis pomonella

The apple maggot (Rhagoletis pomonella), also known as the railroad worm, is a species of fruit fly, and a pest of several types of fruits, especially apples. This species evolved about 150 years ago through a sympatric shift from the native host hawthorn to the domesticated apple species Malus domestica in the northeastern United States. This fly is believed to have been accidentally spread to the western United States from the endemic eastern United States region through contaminated apples at multiple points throughout the 20th century. The apple maggot uses Batesian mimicry as a method of defense, with coloration resembling that of the forelegs and pedipalps of a jumping spider.

Picture credit: Creative Commons Attribution 3.0 via Wikimedia Commons (Image source)

Taxonomy ID 28610

(Text from Wikipedia.)

More information General information about this species can be found in Wikipedia

Assembly

The assembly presented here has been imported from INSDC and is linked to the assembly accession [GCA_013731165.1].

The total length of the assembly is 1223288327 bp contained within 32060 scaffolds. The scaffold N50 value is 72319622, the scaffold L50 value is 7. Assembly gaps span 98042700 bp. The GC% content of the assembly is 36.0%.

Annotation

Ensembl Metazoa displaying genes imported from NCBI RefSeq annotation release v100. Small RNA features, protein features, BLAST hits and cross-references have been computed by Ensembl Metazoa.

Statistics

Summary

AssemblyRhpom_1.0, INSDC Assembly GCA_013731165.1,
Database version113.1
Golden Path Length1,223,288,327
Genebuild byNCBI
Genebuild methodImport
Data sourceDepartment of Entomology, University of Illinois at Urbana-Champaign

Gene counts

Coding genes21,904
Non coding genes2,568
Small non coding genes511
Long non coding genes2,057
Pseudogenes712
Gene transcripts34,989