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Stomoxys calcitrans (Stable fly, USDA) (ScalU1) ▼

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Stomoxys calcitrans (Stable fly, USDA) Assembly and Gene Annotation

The Stomoxys calcitrans data and its display on Ensembl Genomes are made possible through a joint effort by the Ensembl Genomes group and VectorBase, a component of VEuPathDB.

The assembly name may not match that from INSDC due to additional community contributions applied by VEuPathDB to the initial INSDC assembly (recorded by the assembly accession).

About Stomoxys calcitrans

Stable fly, a comparator species for the tsetse project.

USDA strain

Inbred line supplied by Dr. Pia Olafson, USDA. Genome sequencing was undertaken on pooled multiple male (F7 generation from inbred line 8C7A2A5H3J4) individual DNA isolates.

Source: VectorBase

Photo credit: Peterwchen Creative Commons Attribution 4.0 via Wikimedia Commons (Image source)

ScalU1 assembly

Submitted by Glossina Genomes Consortium

ScalU1.6 gene set

Community annotation patch build for July 2019

More information

General information about this species can be found in Wikipedia.

Statistics

Summary

AssemblyScalU1, INSDC Assembly GCA_001015335.1, Jun 2015
Database version113.1
Golden Path Length971,188,624
Genebuild byVEuPathDB
Genebuild methodImport
Data sourceVectorBase

Gene counts

Coding genes14,078
Non coding genes2,775
Small non coding genes2,773
Long non coding genes2
Pseudogenes117
Gene transcripts26,147