Summary
- Splice variants
- Transcript comparison
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Sequence
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Metazoan Compara
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- Orthologues
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Pan-taxonomic Compara
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DB built by FlyBase

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Gene: nudE FBgn0036059

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Description

nudE

Gene Synonyms

Location

Primary_assembly 3L: 9,899,241-9,903,031 forward strand.

BDGP6.46:AE014296.5

About this gene

This gene has 5 transcripts (splice variants) and 80 orthologues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
nudE-RC	FBtr0113159	1528	377aa	FBpp0112072	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A8JNQ1	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
nudE-RF	FBtr0345695	2133	328aa	FBpp0311744	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A8JNQ0	-	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
nudE-RB	FBtr0113158	2067	328aa	FBpp0112071	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A8JNQ0	-	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
nudE-RA	FBtr0076344	1975	317aa	FBpp0076073	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VT70	-	-
nudE-RD	FBtr0114600	1246	283aa	FBpp0113092	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B7Z0G0	-	-

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Summary

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