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Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
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Literature
Metazoan Compara
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DB built by WormBase

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Gene: ccr-4 WBGene00000376

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Description

Endo/exonuclease/phosphatase domain-containing protein; Poly(A)-specific ribonuclease [Source:NCBI gene;Acc:178184]

Location

Chromosome IV: 12,361,542-12,371,852 forward strand.

WBcel235:BX284604.4

About this gene

This gene has 6 transcripts (splice variants), 55 orthologues and 2 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
-	ZC518.3d.1	3531	677aa	ZC518.3d.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B3GWC3	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
-	ZC518.3b.1	3180	613aa	ZC518.3b.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9U1P4	-	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
-	ZC518.3a.1	3157	606aa	ZC518.3a.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	G5EE09	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
-	ZC518.3c.1	3153	597aa	ZC518.3c.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8I4B4	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
-	ZC518.3c.2	3028	597aa	ZC518.3c.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8I4B4	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
-	ZC518.3e.1	1203	400aa	ZC518.3e.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A061AD13	-	-

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Summary

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