Summary
- Splice variants
- Transcript comparison
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Sequence
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Literature
Metazoan Compara
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Pan-taxonomic Compara
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DB built by WormBase

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Gene: gar-1 WBGene00001517

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Description

G_PROTEIN_RECEP_F1_2 domain-containing protein; putative muscarinic acetylcholine receptor gar-1 [Source:NCBI gene;Acc:180922]

Location

Chromosome X: 6,479,443-6,484,880 reverse strand.

WBcel235:BX284606.5

About this gene

This gene has 5 transcripts (splice variants), 96 orthologues and 16 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
-	C15B12.5b.1	2405	713aa	C15B12.5b.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q18007	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
-	C15B12.5a.1	2244	682aa	C15B12.5a.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q18007	-	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
-	C15B12.5d.1	2133	710aa	C15B12.5d.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A4V0IIV3	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
-	C15B12.5c.1	2060	622aa	C15B12.5c.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q18007	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
-	C15B12.5e.1	2040	679aa	C15B12.5e.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A4V0ILB0	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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