Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
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Literature
Metazoan Compara
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- Gene tree (Protostomes)
- Gene tree (Insects)
- Gene gain/loss tree
- Orthologues
- Paralogues
Pan-taxonomic Compara
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- GO: Biological process
- GO: Cellular component
- GO: Molecular function
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Genetic Variation
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DB built by WormBase

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Gene: hlh-11 WBGene00001955

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Description

Helix-loop-helix protein 11 [Source:NCBI gene;Acc:176360]

Location

Chromosome III: 9,619,711-9,626,529 forward strand.

WBcel235:BX284603.4

About this gene

This gene has 8 transcripts (splice variants), 56 orthologues and 2 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
-	F58A4.7b.3	2165	431aa	F58A4.7b.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	P34474	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
-	F58A4.7a.2	2159	429aa	F58A4.7a.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	P34474	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
-	F58A4.7d.2	2130	136aa	F58A4.7d.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	P34474	-	-
-	F58A4.7b.1	1985	431aa	F58A4.7b.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	P34474	-	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
-	F58A4.7b.2	1979	431aa	F58A4.7b.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	P34474	-	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
-	F58A4.7d.1	1978	136aa	F58A4.7d.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	P34474	-	-
-	F58A4.7a.1	1967	429aa	F58A4.7a.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	P34474	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
-	F58A4.7b.4	1929	431aa	F58A4.7b.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	P34474	-	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,

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Summary

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