Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Gene families
Literature
Metazoan Compara
- Genomic alignments
- Gene tree (Metazoa)
- Gene tree (Protostomes)
- Gene tree (Insects)
- Gene gain/loss tree
- Orthologues
- Paralogues
Pan-taxonomic Compara
- Gene Tree
- Orthologues
Ontologies
- GO: Cellular component
- GO: Molecular function
- GO: Biological process
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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DB built by WormBase

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Gene: ifc-2 WBGene00002056

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Description

IF rod domain-containing protein; Intermediate Filament, C; Intermediate filament protein ifc-2 [Source:NCBI gene;Acc:180414]

Location

Chromosome X: 642,156-654,904 reverse strand.

WBcel235:BX284606.5

About this gene

This gene has 7 transcripts (splice variants), 23 orthologues and 11 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
-	M6.1e.1	4020	1339aa	M6.1e.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5E4LYE2	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
-	M6.1a.1	4317	1141aa	M6.1a.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q21067	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
-	M6.1a.2	4016	1141aa	M6.1a.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q21067	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
-	M6.1b.1	3859	1261aa	M6.1b.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q21067	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
-	M6.1f.1	2119	502aa	M6.1f.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5E4M3F7	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
-	M6.1c.1	2097	698aa	M6.1c.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A7I9BEY5	-	-
-	M6.1d.1	1979	622aa	M6.1d.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	G8JY94	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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