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Summary
- Splice variants
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DB built by WormBase

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Gene: itx-1 WBGene00002174

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Description

InTestinal NeureXin-like [Source:NCBI gene;Acc:171846]

Location

Chromosome I: 2,802,803-2,815,830 forward strand.

WBcel235:BX284601.5

About this gene

This gene has 5 transcripts (splice variants), 392 orthologues and 48 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
-	W03D8.6a.1	5113	1645aa	W03D8.6a.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	O45000	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
-	W03D8.6c.1	5135	1642aa	W03D8.6c.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A078BS63	-	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
-	W03D8.6b.1	5059	1620aa	W03D8.6b.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	H1ZUX6	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
-	W03D8.6d.1	4428	1475aa	W03D8.6d.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A078BPL3	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
-	W03D8.6e.1	4362	1453aa	W03D8.6e.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A078BPJ4	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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