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Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Gene families
Literature
Metazoan Compara
- Genomic alignments
- Gene tree (Metazoa)
- Gene tree (Protostomes)
- Gene tree (Insects)
- Gene gain/loss tree
- Orthologues
- Paralogues
Pan-taxonomic Compara
- Gene Tree
- Orthologues
Ontologies
- GO: Cellular component
- GO: Molecular function
- GO: Biological process
Phenotypes
Genetic Variation
- Variant table
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- Structural variants
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Molecular interactions
Regulation
External references
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ID History
- Gene history

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DB built by WormBase

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Gene: pif-1 WBGene00004028

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Description

ATP-dependent DNA helicase; ATP-dependent DNA helicase PIF1 [Source:NCBI gene;Acc:171665]

Location

Chromosome I: 719,929-731,078 forward strand.

WBcel235:BX284601.5

About this gene

This gene has 4 transcripts (splice variants) and 58 orthologues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
-	Y18H1A.6a.1	2324	677aa	Y18H1A.6a.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	G5EFV7	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
-	Y18H1A.6c.1	1716	571aa	Y18H1A.6c.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	V6CIU3	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
-	Y18H1A.6b.1	1185	394aa	Y18H1A.6b.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	V6CL86	-	-
-	Y18H1A.6d.1	243	80aa	Y18H1A.6d.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	V6CJZ4	-	-

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Summary

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