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Summary
- Splice variants
- Transcript comparison
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Sequence
- Secondary Structure
Gene families
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Metazoan Compara
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Pan-taxonomic Compara
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DB built by WormBase

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Gene: F40F8.1 WBGene00009575

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Description

UMP-CMP kinase; UMP-CMP kinase 2 [Source:NCBI gene;Acc:174701]

Location

Chromosome II: 11,127,664-11,129,267 forward strand.

WBcel235:BX284602.5

About this gene

This gene has 3 transcripts (splice variants), 56 orthologues and 6 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
-	F40F8.1b.1	840	228aa	F40F8.1b.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0K3ARK6	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
-	F40F8.1a.1	746	191aa	F40F8.1a.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q20230	-	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
-	F40F8.1c	1358	No protein	-	A non-coding gene.ncRNA	-	-	-

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Summary

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