Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Gene families
Literature
Metazoan Compara
- Genomic alignments
- Gene tree (Metazoa)
- Gene tree (Protostomes)
- Gene tree (Insects)
- Gene gain/loss tree
- Orthologues
- Paralogues
Pan-taxonomic Compara
- Gene Tree
- Orthologues
Ontologies
- GO: Cellular component
- GO: Biological process
- GO: Molecular function
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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DB built by WormBase

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Gene: rpa-4 WBGene00019079

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Description

RPA_C domain-containing protein [Source:NCBI gene;Acc:186576]

Location

Chromosome I: 5,509,467-5,511,705 reverse strand.

WBcel235:BX284601.5

About this gene

This gene has 9 transcripts (splice variants), 22 orthologues and 1 paralogue.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
-	F59A3.6a.2	1759	293aa	F59A3.6a.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	P91356	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
-	F59A3.6a.1	1698	293aa	F59A3.6a.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	P91356	-	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
-	F59A3.6a.3	1559	293aa	F59A3.6a.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	P91356	-	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
-	F59A3.6a.4	1246	293aa	F59A3.6a.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	P91356	-	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
-	F59A3.6e.1	616	170aa	F59A3.6e.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8I7G2	-	-
-	F59A3.6c.1	513	170aa	F59A3.6c.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8I7G2	-	-
-	F59A3.6d.1	336	111aa	F59A3.6d.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0K3AU77	-	-
-	F59A3.6f.1	336	111aa	F59A3.6f.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0K3AU77	-	-
-	F59A3.6b	1572	No protein	-	A non-coding gene.ncRNA	-	-	-

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Summary

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