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Summary
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DB built by WormBase

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Gene: Y49G5B.1 WBGene00021732

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Description

Uncharacterized protein [Source:NCBI gene;Acc:178908]

Location

Chromosome V: 5,223,367-5,230,490 forward strand.

WBcel235:BX284605.5

About this gene

This gene has 4 transcripts (splice variants) and 7 orthologues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
-	Y49G5B.1b.1	1748	273aa	Y49G5B.1b.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A7R9SUM3	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
-	Y49G5B.1a.2	1750	271aa	Y49G5B.1a.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9UAZ1	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
-	Y49G5B.1b.2	1633	273aa	Y49G5B.1b.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A7R9SUM3	-	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
-	Y49G5B.1a.1	1622	271aa	Y49G5B.1a.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9UAZ1	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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