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DB built by WormBase

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Gene: swsn-1 WBGene00004203

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Description

SANT domain-containing protein [Source:NCBI gene;Acc:180324]

Location

Chromosome V: 20,239,182-20,249,488 reverse strand.

WBcel235:BX284605.5

About this gene

This gene has 8 transcripts (splice variants) and 47 orthologues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
-	Y113G7B.23c.1	3004	792aa	Y113G7B.23c.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	H8ESF3	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
-	Y113G7B.23e.1	4009	519aa	Y113G7B.23e.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3P6P9B9	-	-
-	Y113G7B.23a.1	3069	789aa	Y113G7B.23a.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	G5EF87	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
-	Y113G7B.23d.1	2067	688aa	Y113G7B.23d.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3P6NNV9	-	-
-	Y113G7B.23b.1	2058	685aa	Y113G7B.23b.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	H8ESF4	-	-
-	Y113G7B.23f.1	1569	522aa	Y113G7B.23f.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3P6NPD2	-	-
-	Y113G7B.23h.1	1350	449aa	Y113G7B.23h.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3P6N6K6	-	-
-	Y113G7B.23g.1	1341	446aa	Y113G7B.23g.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3P6MYA1	-	-

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Summary

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