Transcript: F38A6.2a.1

Description

Echinoderm microtubule-associated protein-like elp-1 [Source:NCBI gene;Acc:180358]

Location

About this transcript

This transcript has 16 exons and is annotated with 24 domains and features.

Gene

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
-	F38A6.2a.1	2743	891aa	F38A6.2a.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	O45487	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
-	F38A6.2b.1	2667	888aa	F38A6.2b.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	C4ALD8	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

Summary

Statistics

Exons: 16, Coding exons: 16, Transcript length: 2,743 bps, Translation length: 891 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: O45487

Version

F38A6.2a.1

Type

Protein coding

Annotation Method

Protein-coding model imported from WormBase