Transcript: C50E10.4b.1

Description

Polycomb protein sop-2 [Source:NCBI gene;Acc:174874]

Location

Chromosome II: 12,339,944-12,344,795 forward strand.

About this transcript

This transcript has 7 exons and is annotated with 11 domains and features.

Gene

This transcript is a product of gene WBGene00004945 Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
-	C50E10.4b.1	2601	737aa	C50E10.4b.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	H8P172	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
-	C50E10.4a.1	2599	735aa	C50E10.4a.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q965H3	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
-	C50E10.4c.1	1530	509aa	C50E10.4c.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	H8P173	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

Summary

Statistics

Exons: 7, Coding exons: 7, Transcript length: 2,601 bps, Translation length: 737 residues

Version

C50E10.4b.1

Type

Protein coding

Annotation Method

Protein-coding model imported from WormBase

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Transcript: C50E10.4b.1

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Transcript: C50E10.4b.1

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