Summary
- Splice variants
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DB built by FlyBase

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Gene: CG30460 FBgn0050460

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Location

Primary_assembly 2R: 17,065,971-17,087,633 reverse strand.

BDGP6.46:AE013599.5

About this gene

This gene has 9 transcripts (splice variants), 61 orthologues and 1 paralogue.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Biotype	UniProt	RefSeq	Flags
CG30460-RC	FBtr0087010	6510	1868aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A1ZAP8	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
CG30460-RE	FBtr0113378	6950	1711aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A8DYH3	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
CG30460-RF	FBtr0273340	6303	1799aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B7YZI6	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
CG30460-RA	FBtr0087011	5942	1520aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A1ZAQ0	-	-
CG30460-RG	FBtr0273341	5346	1480aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B7YZI7 Q6NQX3	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
CG30460-RD	FBtr0087012	5099	1402aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A1ZAQ1	-	-
CG30460-RH	FBtr0300958	4400	1006aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8MRK6	-	-
CG30460-RB	FBtr0087009	4368	1132aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8MRQ9	-	-
CG30460-RI	FBtr0302611	2918	888aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4JD34 C7LAA8	-	-

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Literature

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Showing the top 11 hits from Europe PubMed Central

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PubMed ID	Title	Authors	Journal
33474526	B.2.16 is a non-lethal modifier of the Dark⁸² mosaic eye phenotype in Drosophila melanogaster.	Vrailas-Mortimer AD, Aggarwal N, Ahmed NN, Alberts IM, Alhawasli M, Aljerdi IA, Allen BM, Alnajar AM, Anderson MA, Armstong R, Avery CC, Avila EJ, Baker TN, Basardeh S, Bates NA, Beidas FN, Bosler AC, Brewer DM, Buenaventura RS, Burrell NJ, Cabrera-Lopez AP, Cervantes-Gonzalez AB, Cezar RP, Coronel J, Croslyn C, Damery KR, Diaz-Alavez L, Dixit NP, Duarte DL, Emke AR, English K, Eshun AA, Esterly SR, Estrada AJ, Feng M, Freund MM, Garcia N, Ghotra CS, Ghyasi H, Hale CS, Hulsman L, Jamerson L, Jones AK, Kuczynski M, Lacey-Kennedy TN, Lee MJ, Mahjoub T, Mersinger MC, Muckerheide AD, Myers DW, Nielsen K, Nosowicz PJ, Nunez JA, Ortiz AC, Patel TT, Perry NN, Poser WSA, Puga DM, Quam C, Quintana-Lopez P, Rennerfeldt P, Reyes NM, Rines IG, Roberts C, Robinson DB, Rossa KM, Ruhlmann GJ, Schmidt J, Sherwood JR, Shonoda DH, Soellner H, Torrez JC, Velide M, Weinzapfel Z, Ward AC, Bieser KL, Merkle JA, Stamm JC, Tillett RL, Kagey JD.	MicroPubl Biol 2021 2021
35748724	Altering enhancer-promoter linear distance impacts promoter competition in cis and in trans.	Bateman JR, Johnson JE.	Genetics 222 (1) 2022
33866636	Identification of new Anopheles gambiae transcriptional enhancers using a cross-species prediction approach.	Schember I, Halfon MS.	Insect Mol Biol 30 (4) 2021
36849418	Tip60's Novel RNA-Binding Function Modulates Alternative Splicing of Pre-mRNA Targets Implicated in Alzheimer's Disease.	Bhatnagar A, Krick K, Karisetty BC, Armour EM, Heller EA, Elefant F.	J Neurosci 43 (13) 2023
32054635	Reduced Function of the Glutathione S-Transferase S1 Suppresses Behavioral Hyperexcitability in Drosophila Expressing Mutant Voltage-Gated Sodium Channels.	Chen HL, Kasuya J, Lansdon P, Kaas G, Tang H, Sodders M, Kitamoto T.	G3 (Bethesda) 10 (4) 2020
32653899	Contributions of cis- and trans-Regulatory Evolution to Transcriptomic Divergence across Populations in the Drosophila mojavensis Larval Brain.	Benowitz KM, Coleman JM, Allan CW, Matzkin LM.	Genome Biol Evol 12 (8) 2020
23803447	Transcriptional profiling of Drosophila S2 cells in early response to Drosophila C virus.	Zhu F, Ding H, Zhu B.	Virol J 10 2013
25491943	A rapid one-generation genetic screen in a Drosophila model to capture rhabdomyosarcoma effectors and therapeutic targets.	Galindo KA, Endicott TR, Avirneni-Vadlamudi U, Galindo RL.	G3 (Bethesda) 5 (2) 2014
22432011	Genome features of "Dark-fly", a Drosophila line reared long-term in a dark environment.	Izutsu M, Zhou J, Sugiyama Y, Nishimura O, Aizu T, Toyoda A, Fujiyama A, Agata K, Fuse N.	PLoS One 7 (3) 2012
25426014	The Drosophila surface glia transcriptome: evolutionary conserved blood-brain barrier processes.	DeSalvo MK, Hindle SJ, Rusan ZM, Orng S, Eddison M, Halliwill K, Bainton RJ.	Front Neurosci 8 2014

Showing 1 to 10 of 11 entries

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