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DB built by FlyBase

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Gene: E(bx) FBgn0000541

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Description

Enhancer of bithorax

Gene Synonyms

Location

Primary_assembly 3L: 233,926-246,912 reverse strand.

BDGP6.46:AE014296.5

About this gene

This gene has 9 transcripts (splice variants), 85 orthologues and 5 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
E(bx)-RH	FBtr0332102	9296	2761aa	FBpp0304412	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9PDH1	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
E(bx)-RA	FBtr0072521	9020	2669aa	FBpp0072421	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E1JHV6 Q9W0T1	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
E(bx)-RE	FBtr0301348	8975	2669aa	FBpp0290562	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E1JHV6 Q9W0T1	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
E(bx)-RB	FBtr0072522	8960	2649aa	FBpp0072422	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
E(bx)-RG	FBtr0332101	8652	2163aa	FBpp0304411	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9PBG5 Q29QY0	-	-
E(bx)-RI	FBtr0332103	8605	2668aa	FBpp0304413	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9PE12	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
E(bx)-RJ	FBtr0332104	8517	2669aa	FBpp0304414	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E1JHV6 Q9W0T1	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
E(bx)-RC	FBtr0072523	7834	2159aa	FBpp0089425	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-	-
E(bx)-RF	FBtr0301349	7362	2139aa	FBpp0290563	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E1JHV7	-	-

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Summary

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