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DB built by FlyBase

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Gene: Lim3 FBgn0002023

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Description

Lim3

Gene Synonyms

Location

Primary_assembly 2L: 19,079,256-19,108,427 reverse strand.

BDGP6.46:AE014134.6

About this gene

This gene has 7 transcripts (splice variants), 75 orthologues and 7 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
Lim3-RG	FBtr0329940	2712	555aa	FBpp0302972	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9PD53	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
Lim3-RF	FBtr0309835	3643	520aa	FBpp0301569	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VJ00	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Lim3-RC	FBtr0309832	3001	520aa	FBpp0301566	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VJ00	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Lim3-RD	FBtr0309833	2712	520aa	FBpp0301567	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q86P58 Q9VJ00	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Lim3-RB	FBtr0081169	2677	520aa	FBpp0080712	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VJ00	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Lim3-RA	FBtr0081170	2562	440aa	FBpp0080713	Gene/transcipt that contains an open reading frame (ORF).Protein coding	O96686 Q9VJ02	-	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
Lim3-RE	FBtr0309834	2284	405aa	FBpp0301568	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9NCY1	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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