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DB built by FlyBase

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Gene: swm FBgn0002044

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Description

second mitotic wave missing

Gene Synonyms

Location

Primary_assembly 2L: 19,493,251-19,497,978 forward strand.

BDGP6.46:AE014134.6

About this gene

This gene has 4 transcripts (splice variants) and 83 orthologues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
swm-RC	FBtr0331325	4151	1063aa	FBpp0303743	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9PDF2	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
swm-RB	FBtr0081245	4114	1062aa	FBpp0080786	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VIV2	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
swm-RA	FBtr0081244	4005	1062aa	FBpp0080785	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VIV2	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
swm-RD	FBtr0331326	3974	1063aa	FBpp0303744	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9PDF2	-	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,

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Summary

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