Summary
- Splice variants
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DB built by FlyBase

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Gene: pnr FBgn0003117

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Description

pannier

Gene Synonyms

Location

Primary_assembly 3R: 16,026,079-16,041,796 forward strand.

BDGP6.46:AE014297.3

About this gene

This gene has 4 transcripts (splice variants), 25 orthologues and 4 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
pnr-RA	FBtr0083221	2720	540aa	FBpp0082675	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A8WHL1 P52168 Q8T3J0	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
pnr-RD	FBtr0335427	3840	488aa	FBpp0307409	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VEZ8	-	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
pnr-RC	FBtr0335426	3592	537aa	FBpp0307408	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4KH81	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
pnr-RB	FBtr0083220	2786	488aa	FBpp0082674	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VEZ8	-	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,

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Summary

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