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DB built by FlyBase

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Gene: vap FBgn0003969

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Description

vacuolar peduncle

Gene Synonyms

Location

Primary_assembly X: 15,999,951-16,005,812 reverse strand.

BDGP6.46:AE014298.5

About this gene

This gene has 6 transcripts (splice variants), 69 orthologues and 3 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
vap-RE	FBtr0340415	4340	954aa	FBpp0309361	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8IR23	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
vap-RF	FBtr0340416	3845	954aa	FBpp0309362	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8IR23	-	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
vap-RA	FBtr0074142	3728	954aa	FBpp0089147	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8IR23	-	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
vap-RD	FBtr0074143	3649	954aa	FBpp0089148	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8IR23	-	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
vap-RC	FBtr0074141	3543	954aa	FBpp0073946	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8IR23	-	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
vap-RB	FBtr0074140	3426	954aa	FBpp0073945	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8IR23 Q8T9B1	-	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,

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Summary

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