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DB built by FlyBase

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Gene: Usp47 FBgn0016756

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Description

Ubiquitin specific protease 47

Gene Synonyms

Location

Primary_assembly 3L: 5,752,973-5,761,886 forward strand.

BDGP6.46:AE014296.5

About this gene

This gene has 3 transcripts (splice variants), 61 orthologues and 17 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
Usp47-RA	FBtr0077095	5475	1556aa	FBpp0076802	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q24574	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
Usp47-RD	FBtr0306259	5493	1538aa	FBpp0297369	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Usp47-RB	FBtr0077096	4835	1556aa	FBpp0076803	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q24574	-	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,

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Summary

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