Summary
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DB built by FlyBase

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Gene: Pdk1 FBgn0020386

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Description

Phosphoinositide-dependent kinase 1

Gene Synonyms

Location

Primary_assembly 3L: 129,450-145,895 forward strand.

BDGP6.46:AE014296.5

About this gene

This gene has 9 transcripts (splice variants), 84 orthologues and 1 paralogue.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
Pdk1-RJ	FBtr0333218	4959	836aa	FBpp0305420	Gene/transcipt that contains an open reading frame (ORF).Protein coding	C7LAC8 H1ZY83 H1ZY86 H5V8B9 Q9W0V1	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
Pdk1-RH	FBtr0072466	4347	755aa	FBpp0072368	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A4V164 H1UUQ3	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Pdk1-RF	FBtr0072467	4162	755aa	FBpp0072369	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A4V164	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Pdk1-RA	FBtr0072465	3986	755aa	FBpp0072367	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A4V164	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Pdk1-RD	FBtr0072464	3706	836aa	FBpp0072366	Gene/transcipt that contains an open reading frame (ORF).Protein coding	H5V8B9 Q9W0V1	-	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
Pdk1-RE	FBtr0072471	3350	539aa	FBpp0072373	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A4V166	-	-
Pdk1-RB	FBtr0072470	3300	539aa	FBpp0072372	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A4V166	-	-
Pdk1-RC	FBtr0072468	2756	819aa	FBpp0072370	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Pdk1-RG	FBtr0072469	2428	539aa	FBpp0072371	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A4V166	-	-

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Summary

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