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Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
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Literature
Metazoan Compara
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DB built by FlyBase

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Gene: Vajk1 FBgn0028938

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Gene Synonyms

Location

Primary_assembly 2L: 13,920,707-13,923,553 reverse strand.

BDGP6.46:AE014134.6

About this gene

This gene has 2 transcripts (splice variants), 4 orthologues and 5 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
Vajk1-RA	FBtr0080560	2433	373aa	FBpp0080137	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9V3G8	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
Vajk1-RB	FBtr0302990	2326	358aa	FBpp0292115	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9MSI3	-	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,

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Summary

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