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DB built by FlyBase

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Gene: Pat1 FBgn0029878

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Description

Protein interacting with APP tail-1

Gene Synonyms

Location

Primary_assembly X: 6,590,776-6,596,954 forward strand.

BDGP6.46:AE014298.5

About this gene

This gene has 3 transcripts (splice variants), 61 orthologues and 1 paralogue.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
Pat1-RA	FBtr0070945	3716	686aa	FBpp0070906	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9W3Y7	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
Pat1-RC	FBtr0331600	3659	686aa	FBpp0303990	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9W3Y7	-	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
Pat1-RB	FBtr0331599	3389	685aa	FBpp0303989	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9PGT5	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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