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DB built by FlyBase

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Gene: CG15312 FBgn0030174

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Location

Primary_assembly X: 10,055,629-10,070,868 reverse strand.

BDGP6.46:AE014298.5

About this gene

This gene has 6 transcripts (splice variants) and 20 orthologues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
CG15312-RD	FBtr0309219	3082	464aa	FBpp0301158	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9NDT2	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
CG15312-RC	FBtr0071423	3511	410aa	FBpp0071358	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9W2Y8	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
CG15312-RE	FBtr0309220	3315	414aa	FBpp0301159	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9NG77	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
CG15312-RF	FBtr0309221	1905	410aa	FBpp0301160	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9W2Y8	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
CG15312-RA	FBtr0071421	1824	410aa	FBpp0071356	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9W2Y8	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
CG15312-RB	FBtr0071422	1482	410aa	FBpp0071357	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9W2Y8	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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