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Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Gene families
Literature
Metazoan Compara
- Genomic alignments
- Gene tree (Metazoa)
- Gene tree (Protostomes)
- Gene tree (Insects)
- Gene tree (Drosophilidae)
- Gene gain/loss tree
- Orthologues
- Paralogues
Pan-taxonomic Compara
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Genetic Variation
- Variant table
- Variant image
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- Gene history

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DB built by FlyBase

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Gene: CG4407 FBgn0030431

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Location

Primary_assembly X: 12,901,353-12,903,516 reverse strand.

BDGP6.46:AE014298.5

About this gene

This gene has 2 transcripts (splice variants), 90 orthologues and 1 paralogue.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
CG4407-RA	FBtr0073695	1338	322aa	FBpp0073528	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VYI5	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
CG4407-RB	FBtr0073696	1235	294aa	FBpp0073529	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8IR76	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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