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Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
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Metazoan Compara
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DB built by FlyBase

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Gene: CG3557 FBgn0031423

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Gene Synonyms

Location

Primary_assembly 2L: 2,384,761-2,385,792 reverse strand.

BDGP6.46:AE014134.6

About this gene

This gene has 3 transcripts (splice variants) and 35 orthologues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
CG3557-RA	FBtr0077790	977	271aa	FBpp0077467	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VQB9	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
CG3557-RB	FBtr0331439	971	269aa	FBpp0303856	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9PE61	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
CG3557-RC	FBtr0331440	941	259aa	FBpp0303857	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9PB11	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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