Summary
- Splice variants
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DB built by FlyBase

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Gene: CG12344 FBgn0033558

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Gene Synonyms

Location

Primary_assembly 2R: 10,827,430-10,835,709 reverse strand.

BDGP6.46:AE013599.5

About this gene

This gene has 4 transcripts (splice variants), 297 orthologues and 21 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
CG12344-RA	FBtr0088246	2843	449aa	FBpp0087341	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8SWZ1	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
CG12344-RB	FBtr0339476	2831	445aa	FBpp0308559	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4LF41	-	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
CG12344-RC	FBtr0339477	2731	449aa	FBpp0308560	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8SWZ1	-	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
CG12344-RD	FBtr0339478	2719	445aa	FBpp0308561	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4LF41	-	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,

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Summary

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