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DB built by FlyBase

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Gene: CG7546 FBgn0035793

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Location

Primary_assembly 3L: 7,510,986-7,517,316 forward strand.

BDGP6.46:AE014296.5

About this gene

This gene has 8 transcripts (splice variants) and 71 orthologues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
CG7546-RD	FBtr0290026	5282	1346aa	FBpp0288465	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B7Z0D3	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
CG7546-RH	FBtr0332143	5240	1332aa	FBpp0304453	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9PEE7	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
CG7546-RA	FBtr0076791	5240	1332aa	FBpp0076505	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VS82	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
CG7546-RE	FBtr0305073	5138	1298aa	FBpp0293610	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9ND57 Q8MQJ3	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
CG7546-RC	FBtr0290025	4841	1199aa	FBpp0288464	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B7Z0D4 Q1WWG9	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
CG7546-RG	FBtr0332142	4781	1179aa	FBpp0304452	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9PBU3	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
CG7546-RF	FBtr0332141	4745	1167aa	FBpp0304451	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9PHN9 Q7K3F6	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
CG7546-RB	FBtr0076792	4742	1166aa	FBpp0076506	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B3DNM3 Q9VS83	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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