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DB built by FlyBase

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Gene: CG17233 FBgn0036958

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Gene Synonyms

Location

Primary_assembly 3L: 20,233,173-20,241,903 reverse strand.

BDGP6.46:AE014296.5

About this gene

This gene has 8 transcripts (splice variants) and 22 orthologues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
CG17233-RC	FBtr0074850	4998	1465aa	FBpp0074619	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VWA0	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
CG17233-RF	FBtr0306327	5327	1464aa	FBpp0297423	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9NDW6	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
CG17233-RG	FBtr0306328	5123	1443aa	FBpp0297424	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9NEF4 Q95SV7	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
CG17233-RA	FBtr0074851	4078	1173aa	FBpp0074620	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8IQV6	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
CG17233-RH	FBtr0306329	3499	1006aa	FBpp0297425	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9NG75	-	-
CG17233-RE	FBtr0306326	3458	1007aa	FBpp0297422	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9NFL3	-	-
CG17233-RI	FBtr0308204	2953	772aa	FBpp0300524	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8IQV5	-	-
CG17233-RD	FBtr0302113	2753	772aa	FBpp0291323	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8IQV5	-	-

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Summary

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