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DB built by FlyBase

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Gene: EMC1 FBgn0037530

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Description

ER membrane protein complex subunit 1

Gene Synonyms

Location

Primary_assembly 3R: 7,903,030-7,907,363 reverse strand.

BDGP6.46:AE014297.3

About this gene

This gene has 4 transcripts (splice variants) and 78 orthologues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
EMC1-RB	FBtr0339713	3292	915aa	FBpp0308770	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q95TQ6 Q9VHY6	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
EMC1-RC	FBtr0339714	3271	908aa	FBpp0308771	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4LGV1 F0JAM8	-	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
EMC1-RA	FBtr0081765	3072	915aa	FBpp0081262	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VHY6	-	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
EMC1-RD	FBtr0339715	3051	908aa	FBpp0308772	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4LGV1	-	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,

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Summary

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