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Summary
- Splice variants
- Transcript comparison
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DB built by FlyBase

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Gene: NijC FBgn0038079

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Description

Ninjurin C

Gene Synonyms

Location

Primary_assembly 3R: 12,695,129-12,697,379 forward strand.

BDGP6.46:AE014297.3

About this gene

This gene has 6 transcripts (splice variants), 59 orthologues and 2 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
NijC-RD	FBtr0113228	762	138aa	FBpp0112140	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A8JQY7	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
NijC-RC	FBtr0113227	969	136aa	FBpp0112139	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A8JQY8	-	-
NijC-RB	FBtr0113226	770	135aa	FBpp0112138	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q4V5X1	-	-
NijC-RE	FBtr0114499	741	131aa	FBpp0112991	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B7Z0S8	-	-
NijC-RG	FBtr0114501	542	130aa	FBpp0112993	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B7Z0S7	-	-
NijC-RF	FBtr0114500	534	133aa	FBpp0112992	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E2QD33	-	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,

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Summary

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