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Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Gene families
Literature
Metazoan Compara
- Genomic alignments
- Gene tree (Metazoa)
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- Gene tree (Insects)
- Gene tree (Drosophilidae)
- Gene gain/loss tree
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Pan-taxonomic Compara
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DB built by FlyBase

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Gene: CG8907 FBgn0038466

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Location

Primary_assembly 3R: 17,008,269-17,012,533 forward strand.

BDGP6.46:AE014297.3

About this gene

This gene has 2 transcripts (splice variants), 44 orthologues and 1 paralogue.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
CG8907-RB	FBtr0305271	2360	732aa	FBpp0293795	Gene/transcipt that contains an open reading frame (ORF).Protein coding	D3DMM2 H9ZYQ1	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
CG8907-RA	FBtr0083372	2368	712aa	FBpp0082815	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q95TJ6	-	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,

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Summary

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