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Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Gene families
Literature
Metazoan Compara
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- Gene tree (Protostomes)
- Gene tree (Insects)
- Gene tree (Drosophilidae)
- Gene gain/loss tree
- Orthologues
- Paralogues
Pan-taxonomic Compara
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- GO: Cellular component
- GO: Biological process
- GO: Molecular function
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Genetic Variation
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DB built by FlyBase

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Gene: CG5890 FBgn0039380

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Gene Synonyms

Location

Primary_assembly 3R: 25,856,154-25,872,670 forward strand.

BDGP6.46:AE014297.3

About this gene

This gene has 3 transcripts (splice variants), 64 orthologues and 11 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
CG5890-RE	FBtr0474233	1433	229aa	FBpp0423186	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VBL2	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
CG5890-RD	FBtr0339159	4649	206aa	FBpp0308303	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A4P1SAA7 Q1WWA7 Q9VBL2	-	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
CG5890-RC	FBtr0339158	1433	206aa	FBpp0308302	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A4P1SAA7 Q9VBL2	-	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,

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Summary

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