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Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Gene families
Literature
Metazoan Compara
- Genomic alignments
- Gene tree (Metazoa)
- Gene tree (Protostomes)
- Gene tree (Insects)
- Gene tree (Drosophilidae)
- Gene gain/loss tree
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Pan-taxonomic Compara
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- Variant table
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DB built by FlyBase

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Gene: CG11313 FBgn0039798

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Location

Primary_assembly 3R: 30,729,837-30,731,165 reverse strand.

BDGP6.46:AE014297.3

About this gene

This gene has 2 transcripts (splice variants), 10 orthologues and 40 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
CG11313-RD	FBtr0335452	1222	370aa	FBpp0307430	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VA44	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
CG11313-RC	FBtr0335451	1213	367aa	FBpp0307429	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4KI65 Q4V3F4 Q4V3K5 Q4V3X9	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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