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DB built by FlyBase

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Gene: Cals FBgn0039928

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Description

Calsyntenin

Gene Synonyms

Location

Primary_assembly 4: 1,112,874-1,123,357 reverse strand.

BDGP6.46:AE014135.4

About this gene

This gene has 4 transcripts (splice variants) and 78 orthologues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
Cals-RC	FBtr0333700	3696	979aa	FBpp0305853	Gene/transcipt that contains an open reading frame (ORF).Protein coding	L0MQ08	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Cals-RD	FBtr0345193	6077	978aa	FBpp0311392	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9V498 X2J9E8	-	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
Cals-RB	FBtr0089208	3872	978aa	FBpp0088272	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9V498 X2J9E8	-	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
Cals-RA	FBtr0089207	3693	978aa	FBpp0088271	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9V498 X2J9E8	-	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,

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Summary

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