Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
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Literature
Metazoan Compara
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- Gene tree (Drosophilidae)
- Gene gain/loss tree
- Orthologues
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Pan-taxonomic Compara
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- GO: Biological process
- GO: Cellular component
- GO: Molecular function
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DB built by FlyBase

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Gene: CG17715 FBgn0041004

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Location

Primary_assembly 2L: 22,844,220-22,854,541 forward strand.

BDGP6.46:AE014134.6

About this gene

This gene has 8 transcripts (splice variants) and 73 orthologues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
CG17715-RD	FBtr0111247	5581	274aa	FBpp0110451	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8SYF7	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
CG17715-RF	FBtr0111249	4284	233aa	FBpp0110482	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q5LJR2	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
CG17715-RE	FBtr0111248	1804	135aa	FBpp0110443	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q5LJR0	-	-
CG17715-RA	FBtr0111244	1745	135aa	FBpp0110454	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q5LJR0 Q6NL55	-	-
CG17715-RB	FBtr0111245	1624	274aa	FBpp0110525	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8SYF7	-	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
CG17715-RH	FBtr0306550	1606	268aa	FBpp0297505	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9NFF0	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
CG17715-RC	FBtr0111246	1501	233aa	FBpp0110471	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q5LJR2	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
CG17715-RG	FBtr0306549	1439	269aa	FBpp0297504	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9NDV5	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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