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DB built by FlyBase

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Gene: vir-1 FBgn0043841

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Description

virus-induced RNA 1

Gene Synonyms

Location

Primary_assembly 2L: 12,403,270-12,423,439 reverse strand.

BDGP6.46:AE014134.6

About this gene

This gene has 7 transcripts (splice variants) and 38 orthologues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
vir-1-RB	FBtr0080389	1849	431aa	FBpp0079970	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q0E8R1 Q8SZ36	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
vir-1-RG	FBtr0334761	1814	423aa	FBpp0306802	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9PFQ2	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
vir-1-RA	FBtr0080390	1765	431aa	FBpp0079971	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q0E8R1	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
vir-1-RH	FBtr0334762	1121	234aa	FBpp0306803	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8SXD5	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
vir-1-RC	FBtr0080391	1048	234aa	FBpp0079972	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8SXD5	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
vir-1-RE	FBtr0305263	953	155aa	FBpp0293787	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q3YBY4	-	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
vir-1-RD	FBtr0100125	905	155aa	FBpp0099471	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q3YBY4	-	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,

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Summary

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