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DB built by FlyBase

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Gene: ClC-a FBgn0051116

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Description

Chloride channel-a

Gene Synonyms

Location

Primary_assembly 3R: 11,797,244-11,813,207 reverse strand.

BDGP6.46:AE014297.3

About this gene

This gene has 7 transcripts (splice variants), 96 orthologues and 2 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
ClC-a-RD	FBtr0082528	3994	1193aa	FBpp0082002	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VGH7	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ClC-a-RH	FBtr0301023	4444	1145aa	FBpp0290245	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-	-
ClC-a-RA	FBtr0082526	4353	1176aa	FBpp0082000	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-	-
ClC-a-RI	FBtr0334891	4082	221aa	FBpp0306912	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4KGV4	-	-
ClC-a-RG	FBtr0300622	4031	1018aa	FBpp0289849	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-	-
ClC-a-RC	FBtr0082527	3972	1049aa	FBpp0082001	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ClC-a-RF	FBtr0113391	3613	1066aa	FBpp0112303	Gene/transcipt that contains an open reading frame (ORF).Protein coding	H1UUP0	-	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,

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Summary

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