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DB built by FlyBase

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Gene: COX6CL FBgn0051644

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Description

Cytochrome c oxidase subunit 6C-like

Gene Synonyms

Location

Primary_assembly 2L: 5,817,890-5,818,443 reverse strand.

BDGP6.46:AE014134.6

About this gene

This gene has 3 transcripts (splice variants) and 39 orthologues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
COX6CL-RC	FBtr0342622	489	90aa	FBpp0309557	Gene/transcipt that contains an open reading frame (ORF).Protein coding	X2JD93	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
COX6CL-RA	FBtr0079159	480	87aa	FBpp0078790	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8T970	-	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
COX6CL-RB	FBtr0342621	474	85aa	FBpp0309556	Gene/transcipt that contains an open reading frame (ORF).Protein coding	X2J713	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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