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Summary
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DB built by FlyBase

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Gene: SmydA-8 FBgn0053548

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Description

SET and MYND domain containing, arthropod-specific, member 8

Gene Synonyms

Location

Primary_assembly X: 2,205,515-2,213,809 reverse strand.

BDGP6.46:AE014298.5

About this gene

This gene has 4 transcripts (splice variants), 20 orthologues and 16 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
SmydA-8-RD	FBtr0345599	2094	462aa	FBpp0311668	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B5RJI3 O46040 X2JDK3	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
SmydA-8-RA	FBtr0070422	1749	462aa	FBpp0070406	Gene/transcipt that contains an open reading frame (ORF).Protein coding	O46040 X2JDK3	-	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
SmydA-8-RB	FBtr0070421	1547	448aa	FBpp0070405	Gene/transcipt that contains an open reading frame (ORF).Protein coding	P83501	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
SmydA-8-RC	FBtr0342772	681	158aa	FBpp0309624	Gene/transcipt that contains an open reading frame (ORF).Protein coding	X2JI38	-	-

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Summary

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