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DB built by FlyBase

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Gene: Pvf3 FBgn0085407

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Description

PDGF- and VEGF-related factor 3

Gene Synonyms

Location

Primary_assembly 2L: 7,098,188-7,157,695 reverse strand.

BDGP6.46:AE014134.6

About this gene

This gene has 4 transcripts (splice variants) and 36 orthologues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
Pvf3-RD	FBtr0112611	3387	651aa	FBpp0111523	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q1WWB4 Q9VM39	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Pvf3-RF	FBtr0342658	4852	638aa	FBpp0309572	Gene/transcipt that contains an open reading frame (ORF).Protein coding	X2J909	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
Pvf3-RA	FBtr0112612	3486	482aa	FBpp0111524	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q1RKZ4 Q7JZN4 Q8T4M1 Q9VM42	-	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
Pvf3-RE	FBtr0301525	2485	469aa	FBpp0290740	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VM40	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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