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DB built by FlyBase

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Gene: corn FBgn0259173

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Description

cornetto

Gene Synonyms

Location

Primary_assembly 3L: 7,142,991-7,157,073 reverse strand.

BDGP6.46:AE014296.5

About this gene

This gene has 4 transcripts (splice variants) and 19 orthologues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
corn-RC	FBtr0299641	5264	1107aa	FBpp0288916	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q1RKS9 Q8IQ73	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
corn-RE	FBtr0333375	5383	970aa	FBpp0305567	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9PBT2	-	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
corn-RD	FBtr0333374	5246	1101aa	FBpp0305566	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9PHM1	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
corn-RB	FBtr0299640	4234	960aa	FBpp0288915	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q960M7 Q967H1 Q9VS25	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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