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Summary
- Splice variants
- Transcript comparison
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Sequence
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DB built by FlyBase

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Gene: CG42788 FBgn0261859

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Location

Primary_assembly 3R: 15,095,957-15,131,926 reverse strand.

BDGP6.46:AE014297.3

About this gene

This gene has 2 transcripts (splice variants) and 59 orthologues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
CG42788-RB	FBtr0303486	6686	1560aa	FBpp0292538	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VFD2 Q9VFD3	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
CG42788-RC	FBtr0303485	6683	1559aa	FBpp0292537	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4JDC8 B9ER11	-	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,

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Summary

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